# Supplementary Materials

This supplementary package contains code implementation and demo videos for our paper.

## Contents

### TEMPO/
Contains the complete source code of our implementation.

### DEMO/
Contains three demonstration videos (400ns protein dynamics trajectories) of randomly selected proteins from our test set. In each video:
- Blue protein represents the ground truth MD trajectory
- Pink protein represents the trajectory generated by our model

## Code Environment Setup

To run our code, please install the following dependencies:

```bash
pip install numpy==1.21.2 pandas==1.5.3
pip install torch==1.12.1+cu113 -f https://download.pytorch.org/whl/torch_stable.html
pip install pytorch_lightning==2.0.4 mdtraj==1.9.9 biopython==1.79
pip install wandb dm-tree einops torchdiffeq fair-esm pyEMMA
pip install matplotlib==3.7.2 numpy==1.21.2
pip install prody